This process occurs partially in the cytoplasm, and partially in the mitochondria. The mitochondria is another organelle in eukaryotic cells. like the chloroplast, the mitochondria has two lipid bilayers around it, and its own genome (indicating that it may be the result of endosymbiosis long ago). In some ways similar to the chloroplast, the mitochondria also has two main sites for the reactions: The matrix, a liquidy part of the mitochondrion, and the christae, the folded membranes in the mitochondrion.