The current study aimed to evaluate and compare the efect of diferent concentrations (0.0–200.0 µM) of jasmonic acid (JA), methyl jasmonate (MeJA), and salicylic acid (SA) on suspension culture mass production and untargeted metabolic profling of the medicinal plant Cymbopogon schoenanthus subsp. proximus. The addition of 50 µM MeJA improved the fresh weight of embryogenic tissue signifcantly. MeJA and SA did not afect tissue dry weight, whereas JA signifcantly decreased it. Based on 1 H and 1 H–13C NMR data and NMR databases, 50 compounds were identifed. The addition of stress hormones resulted in the biosynthesis of novel metabolites like theophylline and syringate that were absent in control samples. In addition, signifcant variations in the concentrations of numerous compounds, including sugars, amino acids, organic acids, phenols, and alkaloids, were observed. The upregulation of trigonelline concentration was observed upon the addition of a higher concentration of MeJA (200 µM), whereas all tested concentrations of SA resulted in its upregulation. Addition of JA and SA causes signifcant changes in aminoacyl-tRNA biosynthesis pathway and amino acid metabolism pathways, such as alanine-aspartate and glutamate metabolism and arginine and proline metabolism. MeJA had signifcant impacts on glycolysis and starch-glucose metabolism pathways in addition to amino acids metabolism pathways. The present fndings were successful in demonstrating a correlation and distinction between the efects of JA, MeJA, and SA, on the metabolome of Cymbopogon schoenanthus, a valuable medicinal plant. The identifed metabolites and their associated pathways would be valuable in future biotechnology applications of the genus Cymbopogon.