Inca era
When the Incas arrived, they found that these confederations were so developed that it took the Incas two generations of rulers - Topa Inca Yupanqui and Huayna Capac - to absorb them into the Inca Empire. The native confederations that gave them the most problems were deported to distant areas of Peru, Bolivia, and north Argentina. Similarly, a number of loyal Inca subjects from Peru and Bolivia were brought to Ecuador to prevent rebellion. Thus, the region of highland Ecuador became part of the Inca Empire in 1463 sharing the same language.
In contrast, when the Incas made incursions into coastal Ecuador and the eastern Amazon jungles of Ecuador, they found both the environment and indigenous people more hostile. Moreover, when the Incas tried to subdue them, these indigenous people withdrew to the interior and resorted to guerrilla tactics. As a result, Inca expansion into the Amazon basin and the Pacific coast of Ecuador was hampered. The indigenous people of the Amazon jungle and coastal Ecuador remained relatively autonomous until the Spanish soldiers and missionaries arrived in force. The Amazonian people and the Cayapas of Coastal Ecuador were the only groups to resist Inca and Spanish domination, maintaining their language and culture well into the 21st century.
Before the arrival of the Spaniards, the Inca Empire was involved in a civil war. The untimely death of both the heir Ninan Cuchi and the Emperor Huayna Capac, from a European disease that spread into Ecuador, created a power vacuum between two factions. The northern faction headed by Atahualpa claims that Huayna Capac gave a verbal decree before his death about how the empire should be divided. He gave the territories pertaining to present-day Ecuador and northern Peru to his favorite son Atahualpa, who was to rule from Quito; and he gave the rest to Huáscar, who was to rule from Cuzco. He willed that his heart be buried in Quito, his favorite city, and the rest of his body be buried with his ancestors in Cuzco.
Huáscar did not recognize his father's will, since it did not follow Inca traditions of naming an Inca through the priests. Huáscar ordered Atahualpa to attend their father's burial in Cuzco and pay homage to him as the new Inca ruler. Atahualpa, with a large number of his father's veteran soldiers, decided to ignore Huáscar, and a civil war ensued. A number of bloody battles took place until finally Huáscar was captured. Atahualpa marched south to Cuzco and massacred the royal family associated with his brother.
A small band of Spaniards headed by Francisco Pizarro landed in Tumbez and marched over the Andes Mountains until they reached Cajamarca, where the new Inca Atahualpa was to hold an interview with them. Valverde, the priest, tried to convince Atahualpa that he should join the Catholic Church and declare himself a vassal of Spain. This infuriated Atahualpa so much that he threw the Bible to the ground. At this point the enraged Spaniards, with orders from Valverde, attacked and massacred unarmed escorts of the Inca and captured Atahualpa. Pizarro promised to release Atahualpa if he made good his promise of filling a room full of gold. But, after a mock trial, the Spaniards executed Atahualpa by strangulation.
Spanish Rule
New infectious diseases, endemic to the Europeans, caused high fatalities among the Amerindian population during the first decades of Spanish rule, as they had no immunity. At the same time, the natives were forced into the encomienda labor system for the Spanish. In 1563, Quito became the seat of a real audiencia (administrative district) of Spain and part of the Viceroyalty of Peru and later the Viceroyalty of New Granada.
After nearly 300 years of Spanish rule, Quito was still a small city numbering 10,000 inhabitants. On August 10, 1809, the city's criollos called for independence from Spain (first among the peoples of Latin America). They were led by Juan Pío Montúfar, Quiroga, Salinas, and Bishop Cuero y Caicedo. Quito's nickname, "Luz de América" ("Light of America"), is based on its leading role in trying to secure an independent, local government. Although the new government lasted no more than two months, it had important repercussions and was an inspiration for the independence movement of the rest of Spanish America.