Standard Operating Procedure for
Phytoplankton Analysis
1.0 Scope and Application
This method is utilized to identify, enumerate and measure phytoplankton taxa in samples collected
from the Great Lakes. Algal taxa are identified to the lowest taxonomic rank possible. A listing of
all organisms identified and their respective density and morphometric measurement for biovolume
calculation is reported.
2.0 Summary of Method
The method consists of two parts - analysis of phytoplankton (excluding most diatoms) and
analysis of diatom. For operational reasons, the first part of the analysis is also called "soft algae"
analysis. The "soft algae" are defined as those that are either naked or have a cellulosic cell wall
and cannot withstand acid digestion treatment. In contrast, diatoms have relatively "hard" silicious
valves and the valves can tolerate harsh acid treatment. Initially a preliminary scan is made of a
settled 10 mL sample in order to determine the volume to be used for each of the two analyses. For
the soft algae analysis, organisms are enumerated in a settling chamber using an inverted
microscope at 500x magnification. For diatom analyses, the samples are pretreated with strong
oxidants and the cleaned samples are mounted on glass slides and enumerated using a compound
microscope at 1250x magnification
b. Diatom slides: Lake; Station, CRL and LAB Number.
Note: CRL numbers are assigned by GLNPO to all samples-collected in the field, LAB numbers
are assigned by the contractor in the laboratory, for internal use only, to facilitate the
sample log-in and identification procedure. Each sample has its own CRL Number that
corresponds to a specific LAB Number (see United States Environmental Protection
Agency Phytoplankton and Zooplankton Sample Log-in Standard Operating Procedure).
Standard Operating Procedure forPhytoplankton Analysis1.0 Scope and ApplicationThis method is utilized to identify, enumerate and measure phytoplankton taxa in samples collectedfrom the Great Lakes. Algal taxa are identified to the lowest taxonomic rank possible. A listing ofall organisms identified and their respective density and morphometric measurement for biovolumecalculation is reported.2.0 Summary of MethodThe method consists of two parts - analysis of phytoplankton (excluding most diatoms) andanalysis of diatom. For operational reasons, the first part of the analysis is also called "soft algae"analysis. The "soft algae" are defined as those that are either naked or have a cellulosic cell walland cannot withstand acid digestion treatment. In contrast, diatoms have relatively "hard" siliciousvalves and the valves can tolerate harsh acid treatment. Initially a preliminary scan is made of asettled 10 mL sample in order to determine the volume to be used for each of the two analyses. Forthe soft algae analysis, organisms are enumerated in a settling chamber using an invertedmicroscope at 500x magnification. For diatom analyses, the samples are pretreated with strongoxidants and the cleaned samples are mounted on glass slides and enumerated using a compoundmicroscope at 1250x magnificationb. Diatom slides: Lake; Station, CRL and LAB Number.Note: CRL numbers are assigned by GLNPO to all samples-collected in the field, LAB numbersare assigned by the contractor in the laboratory, for internal use only, to facilitate the
sample log-in and identification procedure. Each sample has its own CRL Number that
corresponds to a specific LAB Number (see United States Environmental Protection
Agency Phytoplankton and Zooplankton Sample Log-in Standard Operating Procedure).
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