The study findings showed that the level of stakeholder participation in health projects among NGOs in Uganda is still low (mean=2.47). This therefore implies that if stakeholders are not actively involved in the project by being consulted, taking up roles and making decisions concerning the health interventions which impact them; this is likely to negatively affect the sustainability of the project. It is also recommended that stakeholders should be consulted as regards the project before it is implemented. This can be in form of letting them air out their views in the consultative meetings for the project, consulting them on the needs identification for the project, and carrying out leadership roles for the project.