This is one of the major concerns is using 'software tools' to manipulate software. You must validated your 'tools' thoroughly to give confidence that the software is not adulterated.
This has often preclude the use of such tools in the pharmaceutical field. I.E. validation of the tools was a bigger task than validation of the software.
Where you store validated software must conform to cGMP requirements. That usually means validating the system to ensure security of the data from unauthorized access, fire, tempest, floods all other biblical disasters.