Two type of Macedonian Beaten ewe milk cheese were manufactured with IND and TRD method and the cheese were well characterized regarding the chemical composition, total FAA, peptide profiles, textural characteristics, and volatile compounds during ripening. The TRD cheese, made with a raw milk and higher scalding temperature, were characterized by higher TS, fat, and protein content. Low levels of protolysis in the cheese; that is, lower casein breakdown and lower levels of WSN,12% TCA-SN, and total FAA, were observed when compared with the IND cheese.