Information on the presence of ochratoxin A (OTA) in local Ethiopian coffee is scarce. Therefore, the objective of this study was to type the fungal and mycotoxin contamination levels in Ethiopian coffee consumed by the local community. Coffee samples were collected from six major coffee growing districts in Jimma zone of Oromiya regional state in Ethiopia. Total fungal incidence mounted up to 87% and Aspergillus (79%), Fusarium (8%) and Penicillium (5%) were the predominant toxigenic genera. OTA producing species A. westerdijkiae, Aspergillus ochraceus, and Aspergillus steynii were identified for the first time in Ethiopia and were shown to be the predominant species while aflatoxin (AF) producing Aspergillus species were scarce. Using an in vitro approach, the OTA production potential was assessed under standardized conditions. Based on this experiment, it was concluded that Aspergillus westerdijkiae isolates were clearly the most potent producers of OTA. The median OTA level in the locally sold Ethiopian coffee was 1.53 μg/kg. Notwithstanding this low median value, significant differences in fungal and toxin incidences were observed between the different coffee processing types, coffee sample types, and storage characteristics.