Figure 8. Gene copy number variation across groups. (A) CN abundances by gene across all 151 isolates. Genes are grouped in four categories (identified by different colours) depending on how many isolates are affected by CN variation in the respective gene. (B) Median copy number changes for each gene are shown (individual dots) and summarised for the four different categories also used in sub-figure A including the direction of effect sizes using boxplots. (C) Correlations of the median gene copy number across all samples and each respective phylogenetic group. (D) Neighbour joining tree using gene CN profiles for each sample.