Here we showed that SSCP InDel markers can be used to study plant breeding. SSCP Indel gene-based markers are very specific and can utilize their known positions in
the rice genome. In addition, SNP and InDel are abundant in rice (Feltus et al. 2004; Shen et al. 2004; Chen et al., 2011), which allows for the development of InDel markers even in small target areas.