The tabulated sRNA counts showed two papaya genomes as the top candidates genomes for the virus present in this sample: EF183499 (PRSV-HN isolate) and HQ424465 (PRSV-HN-1 isolate) with 75,596 and 31,442 of unique sRNA reads, respectively. Unique reads mapped to other 19 PRSV genomes ranged from 38 to 6,399.