A new physical modification applied to prevent the retrogradation of rice flour and rice starch was investigated. This study examined the retrogradation properties of treated rice flour or rice starch paste by three stirring or heating–stirring, or without. The results proved that the retrogradations of rice flour and rice starch were both not substantially affected by three stirring modifications. However, three heating–stirring treatments had a marked effect on retarding the retrogradation of rice flour, but did not affect that of isolated rice starch. In the differential scanning calorimetry (DSC) analysis, modified rice flour by three heating–stirring exhibited the lowest retrogradation enthalpy (3.04 J/g dry matter) as compared to the control RF (5.93 J/g dry matter) and by three stirring (5.08 J/g dry matter). Meantime, it had almost the least recrystallization of retrogradation by X-ray diffraction (XRD). It was also found through scanning electron microscopy (SEM) that the granule structure of this modified rice flour had a more honeycomb-like structure and the lowest crystallinity as compared to the others.