Shade-grown, montane coffee agroforestry systems have the potential to conserve native tree species of
conservation concern (CC) and typical of old growth or late succession (LS) forests in montane cloud
forests. However, it remains unclear how preferential selection by farmers for or against certain tree
species and diameter sizes affects CC and LS trees distribution and abundance. To address this issue, we
investigated how management practices may inadvertently compromise the potential of agroforestry
systems to serve as reservoirs for CC and LS trees. We sampled tree diversity in 31 coffee farms and
10 forest sites in La Sepultura Biosphere Reserve in Chiapas, Mexico and assessed the relative importance
of shade tree density, basal area, proportion of Inga spp. trees, previous land use, and age of fallow (for
farms established on land with an agricultural history) on the proportions of CC and LS trees. We then
examined if tree size distributions differed between farms and forests, and whether land use legacies
mediated the impact of the explanatory variables of interest.