By the advances in automation of DNA sequencing and computerization of analytic methods, sequenced data are usually used to infer phylogenies in fungi (Sreenivasaprasad and Mills, 1998; Takamatsu, 1998). Molecular characters have been essential for phylogenetic analysis in cases when morphological characters are convergent, reduced, or missing among the taxa considered. This is especially true of species that never reproduce sexually, because characters of sexual reproduction traditionally have been the basis for classification of fungi. Guo et al. (2000) identified 19 morphospecies of endophytes from Livistona chinensis by using 5.8S rDNA sequencing. Use of molecular characters allows asexual fungi to be placed among their closest relatives. Carbone and Kohn (1993) demonstrated the confirmations of anamorph-teleomorph connection by comparative sequence analysis of amplified products of Sclerotinia and Sclerotium, which showed 98% sequence homology in the ITS region of rDNA. Kuhls et al. (1997) established the connection between Trichoderma anamorphs and Hypocrea teleomorphs where five Trichoderma-Hypocrea connections were supported by 100% identity in ITS1 and ITS2 sequences. Egger and Sigler (1993) investigated the extype strains of the anamorph Scytalidium vaccinii and the ascomycete Hymenoscyphus ericae. They found 1.2–3.5% divergence in the ITS1 and ITS2 regions, and concluded from these data, and morphological observations, that S. vaccinii and H. ericae are anamorph and teleomorph of a single taxon. Likewise, Couch and Kohn (2002) extracted DNA directly from freeze-dried perithecia of Magnaporthe and from mycelia of anamorphic Pyricularia isolates and the result, based on three genes (actin, beta-tubulin and calmodulin), supported the anamorph-teleomorph connection demonstrated by Hebert (1971) and Yaegashi (1977).