Spain has been locked in political paralysis since December's elections, leaving a hung parliament divided among four main parties, none of them with enough seats to govern alone.
Therefore WADA said in March that it would negotiate agreements to allow Spanish athletes to compete at the Rio de Janeiro Olympics.
In addition, the laboratory in Barcelona has maintained its accreditation, WADA said.
The Madrid lab, which was suspended in December of 2012 for three months, has 21 days to appeal the current decision before the Court of Arbitration for Sport