A single-factor experiment conducted in randomized complete block design (RCBD) with three replications was used to test the seed germination of nine Philippine papaya genotypes under screen house conditions from April to May at the Crop Science Cluster & Institute of Plant Breeding, College of Agriculture, University of the Philippines Los Baños. Significant differences for leaf length and primary root of the germinated seedling of the nine papaya genotypes were using ANOVA and DMRT. However, no significant differences using the same test were detected for percent germination, length of fully expanded leaf and width of the nine papaya genotypes. Genotype 4172 had significantly highest seed germination of 98.33% while 344 had the lowest at 55.00%. Genotype 4173 had significantly longer leaf at 16.36 millimeters, while genotype 344 had the shorter leaf at 8.36 millimeters. In addition, genotype 5648 had the longer primary root at 63.31 millimeters, while genotypes 5649 and 344 had the shortest at 38.44 millimeters and 36.82 millimeters, respectively.