Using 19 SSCP InDel markers, genetic diversity of Thai
rice, IRRI germplasm, and other Oryza species were
0.436, 0.322, and 0.547, respectively (Table 4). To determine
genetic difference among the three groups, we performed
AMOVA and pairwise analyses. The AMOVA
results showed that 15.06% of the variation was caused
by differences among groups, while the remaining
84.94% was caused by differences within groups. The
pairwise Fst estimates among these three groups indicated
that all the three groups were significantly different
from each other.