Types of variation data
Single Nucleotide Polymorphisms (SNPs), including insertions and deletions.
Copy Number Variations (CNVs).
Presence/Absence Variations (PAVs).
Complex alleles. (also called "alternative loci")
Sequences which do not align to the reference genome.
Inversion break points.
Phenotypes.
Germplasm via GRIN.
Transcript assemblies and exome contigs alignments.
Transcript assemblies and exome contigs sequences at GenBank.
Expression data at PLEXdb, GEO, SRA, and other repositories.
Genetic maps.
Haplotypes? Pre-computed analyses?