into the analysis. Because the calculation of IBD sharing
probabilities for an arbitrary relative pair remains difficult,
even using the MCMC technique, implementing the
score statistic for large pedigrees does not seem to be simple
at this moment.
The size of the output file on IBD sharing probabilities
from GENEHUNTER, which depends on the number of
individuals in pedigrees and the number of scanned locations,
may present a potential problem to the R program.
In the genome scan in this report, the size of the output
files is in the range of 6~34 MB. We experienced no problems
with the R program in handling these files when running
it on a Linux cluster with 512 MB memory on each
node. We also tested it on a PC with 256 MB memory and
experienced no problems. If the size of the output file
from GENEHUNTER is too large for the R program to run,
the output file can be split into smaller parts.
เข้าสู่การวิเคราะห์ into the analysis. Because the calculation of IBD sharing
probabilities for an arbitrary relative pair remains difficult,
even using the MCMC technique, implementing the
score statistic for large pedigrees does not seem to be simple
at this moment.
The size of the output file on IBD sharing probabilities
from GENEHUNTER, which depends on the number of
individuals in pedigrees and the number of scanned locations,
may present a potential problem to the R program.
In the genome scan in this report, the size of the output
files is in the range of 6~34 MB. We experienced no problems
with the R program in handling these files when running
it on a Linux cluster with 512 MB memory on each
node. We also tested it on a PC with 256 MB memory and
experienced no problems. If the size of the output file
from GENEHUNTER is too large for the R program to run,
the output file can be split into smaller parts.
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