Sampleswere taken 24 h after challenge tomeasure adhesion of bacteria
to gills using qPCR analysis. Eight fish were collected from each
treatment. As described by Beck et al. (2012), a section of the left second
gill arch (approximately 50mg)was taken fromeach fish. Sampleswere
stored at 80 °C until DNA extraction. All DNA extractions were performed
according to the manufacturer's directions using a DNeasy
Blood and Tissue Kit (Qiagen, Valencia, California). The extracted template
DNA (composed of catfish genomic and bacterial DNA) was used
for pathogen detection, identity confirmation, and quantification using
the primers of Panangala et al. (2007) which were FcFp [50-CCTGTA
CCTAATTGGGGAAAAGAGG-30], FcRp [50-CGGTTATGGCCTTGTTTATC
ATAGA-30] and FAM labeled probe [50-ACAACAATGATTTTGCAGGAGG
AGTATCTGATGGG-30]. This primer and fluorescent probe-set targets a
region of the chondroitin AC lyase gene of F. columnare. Primers and
FAMlabeled probewere obtained fromApplied Biosystems Incorporated
(Foster City, California).
Sampleswere taken 24 h after challenge tomeasure adhesion of bacteriato gills using qPCR analysis. Eight fish were collected from eachtreatment. As described by Beck et al. (2012), a section of the left secondgill arch (approximately 50mg)was taken fromeach fish. Sampleswerestored at 80 °C until DNA extraction. All DNA extractions were performedaccording to the manufacturer's directions using a DNeasyBlood and Tissue Kit (Qiagen, Valencia, California). The extracted templateDNA (composed of catfish genomic and bacterial DNA) was usedfor pathogen detection, identity confirmation, and quantification usingthe primers of Panangala et al. (2007) which were FcFp [50-CCTGTACCTAATTGGGGAAAAGAGG-30], FcRp [50-CGGTTATGGCCTTGTTTATCATAGA-30] and FAM labeled probe [50-ACAACAATGATTTTGCAGGAGGAGTATCTGATGGG-30]. This primer and fluorescent probe-set targets aregion of the chondroitin AC lyase gene of F. columnare. Primers andFAMlabeled probewere obtained fromApplied Biosystems Incorporated(Foster City, California).
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