Glu-1, a putative endo-1,4-b-glucanase, Caf-1, a putative caffeine synthase, and Per-1 apoplastic quiacol peroxidase, genes involved in the regulation of plant growth TcORFX-1(fw2.2-like) and TcLhca-1(photosystem I 24 kDa protein) involved in energy production. This study indicates that induced resistance and growth promotion are not responsible for the activity of T. stromaticum in the biocontrol of the witches’ broom pathogen.