In this work, pectinases-producing filamentous fungi were isolated with the aim of using their enzymes in the clarification of apple and blueberry juices. The experimental extract enzyme EE obtained in solid-state process with a strain identified as belonging to the species Aspergillus niger and designated LB23 was used for treating juices and compared with two commercial enzyme preparations: PectinexClear (PC) for apple juice, and PectinexBE Color (PB) for blueberry juice. After the enzymatic treatment, the treated juices were evaluated with respect to parameters such as viscosity, turbidity, and degreeof clarification, as well as antioxidant capacity, and total phenolic compound content. Considering all comparison criteria, the experimental preparation EE showed results statistically similar or superior to those obtained with the commercial enzyme preparations.