A biomass oil/diesel blend was prepared using an emulsion method and combusted in a diesel engine. An injector was then removed and the morphology, composition, and structure of the carbonaceous deposits on the pintle-type nozzle were characterized using a combination of HRTEM, SEM/EDAX, Raman and XRD. Results showed that the carbon deposition of the emulsified fuel with high crystallinity was greater than that of diesel. The agglomerated particulate diameters of the deposited carbon from diesel and emulsified fuel were approximately 10–30 μm and 50 μm, respectively. The carbon deposition mechanism from the emulsified fuel was attributed to the high oxygen content of the groups leading to increased polymerization and subsequent condensation on the nozzle surfaces that was then carbonised.