The only difference is the energy units of E_a: the former form uses energy per mole, which is common in chemistry, while the latter form uses energy per molecule directly, which is common in physics. The different units are accounted for in using either R = Gas constant or the Boltzmann constant k_B as the multiplier of temperature T.
The units of the pre-exponential factor A are identical to those of the rate constant and will vary depending on the order of the reaction. If the reaction is first order it has the units s−1, and for that reason it is often called the frequency factor or attempt frequency of the reaction. Most simply, k is the number of collisions that result in a reaction per second, A is the total number of collisions (leading to a reaction or not) per second and e^{{-E_a}/{(RT)}} is the probability that any given collision will result in a reaction. It can be seen that either increasing the temperature or decreasing the activation energy (for example through the use of catalysts) will result in an increase in rate of reaction.
Given the small temperature range kinetic studies occur in, it is reasonable to approximate the activation energy as being independent of the temperature. Similarly, under a wide range of practical conditions, the weak temperature dependence of the pre-exponential factor is negligible compared to the temperature dependence of the exp(-E_a/RT) factor; except in the case of "barrierless" diffusion-limited reactions, in which case the pre-exponential factor is dominant and is directly observable