Let's take a look at just a single clip in the project. It is layered with a number of indicators:
Surrounding the iMovie clip above are the following elements:
the "Intro" tag is a chapter mark (mainly useful if you're outputting for DVD)
the "Find better shot?" tag is a comment, the leftmost icon represents a themes transition
the rightmost icon represents a cross-dissolve transition
the bottom green bar represents an audio track
the black sun icon indicates that the clip has had some video adjustments applied to it through the Inspector
the black speaker icon indicates that the clip has had some audio adjustments applied to it through the Inspector. Muted clips have no "sound waves" emitting from the speaker icon.
the black crop icon indicates that the clip has had some cropping, rotation, or zoom effects applied to it using the Crop tool